Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKSTNSGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPLVG-KLDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLSQ-EINVERIVL
3ISV Chain:A ((6-267))
---QAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNL-LDATDEE-EHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKL
General information:
TITO was launched using:
RESULT:
Template:
3ISV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -258464 for 2365 contacts (-109.3/contact) +
2D Compatibility (PS) -27642 + (NN) -6407 + (LL) -148
1D Compatibility (HY) -30000 + (ID) 7000
Total energy: -329661.0 ( -139.39 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3ISV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ISV-query.scw
PDB file :
Tito_Scwrl_3ISV.pdb
: