Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRLPNLQVALDHSDLQGAIKAAVSVGHEVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICCATIPTMEAALKAIKEERGDRGEIQIELYGDWTYEQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIDMGFRVSVTGGLSTDTLQLFEGVDVFTFIAGRGITEADDPAAAARAFKDEIKRIWG
1SO4 Chain:A ((3-215))
----LPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAAIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGD---VQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELW-
General information:
TITO was launched using:
RESULT:
Template:
1SO4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149670 for 1839 contacts (-81.4/contact) +
2D Compatibility (PS) -23243 + (NN) -10588 + (LL) 284
1D Compatibility (HY) -19200 + (ID) 5300
Total energy: -207717.0 ( -112.95 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_1SO4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SO4-query.scw
PDB file :
Tito_Scwrl_1SO4.pdb
: