Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKLADQAYEFVRDAAANDAVILFVGTKKQAAEAVAEEAKRAGQYFINHRWLGGTLTNWGTIQKRIARLKEIKRMEEEGTFELLPKKEVALLNKQRARLEKFLGGIEDMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNADPDDIDVIIPANDDAIRAVKLITSKLADAVIEGRQG---EDADVDFAQEAQADSIEEIVEVVEGSNND
1N34 Chain:B ((7-240))
-----VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQ--------------------
General information:
TITO was launched using:
RESULT:
Template:
1N34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93327 for 1927 contacts (-48.4/contact) +
2D Compatibility (PS) -25020 + (NN) -12435 + (LL) 2092
1D Compatibility (HY) -22000 + (ID) 5900
Total energy: -156590.0 ( -81.26 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_1N34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N34-query.scw
PDB file :
Tito_Scwrl_1N34.pdb
: