Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAEVLYELKVAEAKYFFYLREAKQRNLKISRWK
1VQ8 Chain:V ((2-33))
-TVLHVQEIRDMTPAEREAELDDLKTELLNARA-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9022 for 133 contacts (67.8/contact) +
2D Compatibility (PS) -3532 + (NN) -2405 + (LL) 4440
1D Compatibility (HY) -800 + (ID) 250
Total energy: 6475.0 ( 48.68 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: