Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------MEPIFIIGIILG---LVILLFLSGSA------AKPLKWIGITAVKFVA---GALLLVCVNMFGGSLGIHVPINLVTTAISGILGIPGIAALVVIKQFII-------------------
1V9W Chain:A ((1-130))
GSEGAATMATFEEVSVLGFEEFDKAVKEHESKTIFAYFSGSKDTEGKSWCPDCVEAEPVIREGLKHVTEDCVFIYCQ-----VGDKPYWKDPNNDFRQKLKITAVPTLLKYGTPQKLVESECCQSSLVEMIFSED
General information:
TITO was launched using:
RESULT:
Template:
1V9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107879 for 525 contacts (-205.5/contact) +
2D Compatibility (PS) -8429 + (NN) 1291 + (LL) -32
1D Compatibility (HY) 0 + (ID) 300
Total energy: -115349.0 ( -219.71 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_1V9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9W-query.scw
PDB file :
Tito_Scwrl_1V9W.pdb
: