Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHF-AGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKTIFEGLKNPLVATRYHSLIVKPETLPSCFTVTAQTK-EGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLRN----FIETYRKEVIA
1CE8 Chain:B ((204-379))
-------------NILRMLVDRGCRLTIVPAQT-SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV------MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRK----
General information:
TITO was launched using:
RESULT:
Template:
1CE8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78960 for 1346 contacts (-58.7/contact) +
2D Compatibility (PS) -18594 + (NN) -8261 + (LL) 1908
1D Compatibility (HY) -7600 + (ID) 2450
Total energy: -113957.0 ( -84.66 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1CE8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CE8-query.scw
PDB file :
Tito_Scwrl_1CE8.pdb
: