Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAIL-AVPVKDTIKRV-QDLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
2XWM Chain:A ((2-218))
-ATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGG---EDSV-IVSGGVDRTESVALALEAAGDAEFVLVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARATAGGV--TDDASLVEQL-GTPVQIVDGDPLAFKITTPLDLVLAEAVL---------
General information:
TITO was launched using:
RESULT:
Template:
2XWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119992 for 1776 contacts (-67.6/contact) +
2D Compatibility (PS) -23263 + (NN) -9028 + (LL) 704
1D Compatibility (HY) -14400 + (ID) 4100
Total energy: -170079.0 ( -95.77 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_2XWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XWM-query.scw
PDB file :
Tito_Scwrl_2XWM.pdb
: