Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFFRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLI-SQVSRFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKKVRRDLNHQDLPDPVADRFKSLEQQILELKAELEDRKERINQK
1T3D Chain:A ((100-260))
--------DIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQ-VDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIV------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1T3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136746 for 1303 contacts (-104.9/contact) +
2D Compatibility (PS) -17158 + (NN) -5082 + (LL) 4360
1D Compatibility (HY) -13200 + (ID) 3950
Total energy: -171776.0 ( -131.83 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1T3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T3D-query.scw
PDB file :
Tito_Scwrl_1T3D.pdb
: