Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
3TG8 Chain:A ((15-228))
--------------VDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIK-GRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
3TG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118221 for 1712 contacts (-69.1/contact) +
2D Compatibility (PS) -23464 + (NN) -15699 + (LL) 1804
1D Compatibility (HY) -18000 + (ID) 5900
Total energy: -179480.0 ( -104.84 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_3TG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TG8-query.scw
PDB file :
Tito_Scwrl_3TG8.pdb
: