Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLDK
2D3O Chain:S ((14-113))
LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGKT---
General information:
TITO was launched using:
RESULT:
Template:
2D3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6643 for 563 contacts (11.8/contact) +
2D Compatibility (PS) -10827 + (NN) -3122 + (LL) 164
1D Compatibility (HY) -6400 + (ID) 2550
Total energy: -16092.0 ( -28.58 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2D3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D3O-query.scw
PDB file :
Tito_Scwrl_2D3O.pdb
: