Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTANTDEEARELLTQVGMPFQK
5DM7 Chain:D ((3-179))
--QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK
General information:
TITO was launched using:
RESULT:
Template:
5DM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68926 for 1225 contacts (-56.3/contact) +
2D Compatibility (PS) -18702 + (NN) -5327 + (LL) 128
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -119827.0 ( -97.82 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_5DM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DM7-query.scw
PDB file :
Tito_Scwrl_5DM7.pdb
: