Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDSINNGHKESHDHRISNDAEMITDEKWQAIINNDAAYNNQFFYAVKSTGIFCKPSCKSRVPKKENVCIFPNTEQALRANFRPCKRCKPTNEKMPDSEWVDLITEYIDKNFTEKLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAKKYLIQ--TNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKMEETYNGNK
3MN2 Chain:A ((1-107))
-------------------------------------------------------------------------------------------------SNAVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPSETLQRAR---------
General information:
TITO was launched using:
RESULT:
Template:
3MN2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72384 for 727 contacts (-99.6/contact) +
2D Compatibility (PS) -11065 + (NN) -2310 + (LL) 5020
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -85539.0 ( -117.66 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_3MN2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MN2-query.scw
PDB file :
Tito_Scwrl_3MN2.pdb
: