Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLYES
4YMI Chain:A ((28-224))-RRLGVMGGTFDPIHNGHLVAASEVADRFALDEVIFVPTGQP-----RKVSPAEHRYLMTVIATASNPRFTVSRADIDRGGATYTVDTLTDLRTAHPDADLYFITGADALASILSWENWEQLFTLAKFIGVSRPGY------GLSLVEVPALAISSTDCRIRAGQARPIWYLVPDGVVQYVAKHRLYSG


General information:
TITO was launched using:
RESULT:

Template: 4YMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 913 -134714 -147.55 -761.09
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.80

3D Compatibility (PKB) : -147.55
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.542

(partial model without unconserved sides chains):
PDB file : Tito_4YMI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YMI-query.scw
PDB file : Tito_Scwrl_4YMI.pdb: