Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKSKFEASIDNLKEIEMNAYAYELIREIVLPDMLGQDYSSMMYWAGKHLARKFPLE---------SWEEFPAFFEEAGW----GT-LTNVSA-KKQELEFELEG-PIISNRLK--H---QKEPCFQLEAGFIAEQIQLMNDQIAESYEQVKKRADKVVLTVKWDMKDPV
2C0J Chain:B ((36-159))----------------------------------------VLEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLL----GLQYLEEAPKFLAFTCGLLRGALYT-LGIESVVTASVAAL-PVCKFQVVIPKS---


General information:
TITO was launched using:
RESULT:

Template: 2C0J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 328 957 2.92 9.66
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain B : 0.57

3D Compatibility (PKB) : 2.92
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.395

(partial model without unconserved sides chains):
PDB file : Tito_2C0J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2C0J-query.scw
PDB file : Tito_Scwrl_2C0J.pdb: