Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTPVPGVVVHLPIAQVGPQPAA
1YSH Chain:D ((38-56))
-------------------------------------------FCEF-----CGKFAVKR-KAVGIWG-----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10286 for 69 contacts (-149.1/contact) +
2D Compatibility (PS) -1835 + (NN) 859 + (LL) 7112
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -6850.0 ( -99.28 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1YSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSH-query.scw
PDB file :
Tito_Scwrl_1YSH.pdb
: