Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
4DR1 Chain:R ((19-85))
-----------KAKVKATLGEFDLR-----DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKL-
General information:
TITO was launched using:
RESULT:
Template:
4DR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1103 for 421 contacts (-2.6/contact) +
2D Compatibility (PS) -6977 + (NN) -1382 + (LL) 1044
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -12918.0 ( -30.68 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_4DR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR1-query.scw
PDB file :
Tito_Scwrl_4DR1.pdb
: