Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPVVTAVGRRRGFAMPWVSTARSGAVMLANYSAGVCGRVSSPGLNVRKMCLKANTPGAVTWLDTPKRFLSTQTASRCMAVNSSDVVTGRIDPQVLHTPLNTDVDGYAHAMHSSINSGPLEYLPATFSVFPALGDVGDLGGGVGAATYA-LDRLSNMRSGACVGGGESPWRSLMT |
2JPJ Chain:A ((3-24)) | --------------------------------------------------------------------------------------------------------------------------------------WDDIGQGIGRVAYWVGKALGNL------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JPJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -592 for 74 contacts (-8.0/contact) +
2D Compatibility (PS) -1956 + (NN) 2084 + (LL) 7520
1D Compatibility (HY) -2000 + (ID) 350
Total energy: 4706.0 ( 63.59 by residue)
QMean score : -0.539
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