Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGT-QCVLDVGCGDGLLAARLARRIP-YVTAVDIDAPVLRRAQTRF---ANAPIRWLHADIMTAELPNAGFDAVVSNAALHHIEDTRTALSRLGGLVTPGGTLAVVTFVTPSLRNGLWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRALLPGACIRRLLYGRVLVTWRAPV
4KRI Chain:A ((207-327))
----WNQNL---AILKRFGPMKTGQRMLDIGVGIGGGARQAASEFGLQVHGVDLSTNMLAVALERVHKEKDARVTYAVCDACEYEFEPNSFDYVFSRDCIQHIKDTDKLFSRIYRALKPGGKVLITMY--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4KRI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99410 for 884 contacts (-112.5/contact) +
2D Compatibility (PS) -12808 + (NN) -7656 + (LL) 5332
1D Compatibility (HY) -8800 + (ID) 1850
Total energy: -125192.0 ( -141.62 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_4KRI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KRI-query.scw
PDB file :
Tito_Scwrl_4KRI.pdb
: