Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQREIYDG------EARLSWVLA----ALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFG--------------------------------------DDAWMSVTASLLILFFVAGVVIASVCRRHFWAAHPHG--PTVLTTFSLIFAAGVDIMLGGWHE-------------SMLDFVPILFVVFGI-------GALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAIS--------MVVTGPQMLAVAAVVCAA----TTGYTYLHADRRG---------LVNQKRPQPGKRLFRALRRGELDSGTSTPATNYGSS |
1W5C Chain:D ((1-350)) | MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W5C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95785 for 1519 contacts (-63.1/contact) +
2D Compatibility (PS) -25688 + (NN) 1403 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 2050
Total energy: -131720.0 ( -86.71 by residue)
QMean score : -0.003
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