Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGT----HAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEA--SGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHFVRPGWRLPRRTAESALRASLSPELGT
1FVG Chain:A ((44-197))
----QMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKDPDGY------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62118 for 1144 contacts (-54.3/contact) +
2D Compatibility (PS) -16007 + (NN) -12093 + (LL) 1884
1D Compatibility (HY) -8000 + (ID) 2950
Total energy: -99284.0 ( -86.79 by residue)
QMean score : 0.780
(partial model without unconserved sides chains):
PDB file :
Tito_1FVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FVG-query.scw
PDB file :
Tito_Scwrl_1FVG.pdb
: