Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIMYNYPAMLGHAGDMAGYAGTLQSLGAEIAVEQAALQSAWQGDTGITYQAWQAQW-------NQAMEDLVR----AYHAMSSTHEANTMAMMARDTAEAAKWGG
3FAV Chain:B ((9-80))
---------GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8235 for 308 contacts (-26.7/contact) +
2D Compatibility (PS) -6753 + (NN) -1960 + (LL) 2688
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -16760.0 ( -54.42 by residue)
QMean score : 0.124
(partial model without unconserved sides chains):
PDB file :
Tito_3FAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FAV-query.scw
PDB file :
Tito_Scwrl_3FAV.pdb
: