Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVINPAVADWIKVVCFPDRWLDLRYVGPAS--------A------DGACELLRGIVALRTGTGKTSNKTG-NGVVALRNAQLVTFTAMDIDDPRALVPILGVGLA---HRPPARFDEFSLPTRVGARADERL--RSGVP-LGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVS--PSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS |
4W4L Chain:C ((6-302)) | ---TRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVN-DAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARR----------GQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRVSS------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4W4L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188616 for 2149 contacts (-87.8/contact) +
2D Compatibility (PS) -30054 + (NN) -17686 + (LL) 424
1D Compatibility (HY) -8800 + (ID) 3100
Total energy: -247832.0 ( -115.32 by residue)
QMean score : 0.493
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