Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGG--PLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAVAGQGRG
3GP5 Chain:A ((11-231))
-----KLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPI-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95484 for 1796 contacts (-53.2/contact) +
2D Compatibility (PS) -23933 + (NN) -16419 + (LL) 1184
1D Compatibility (HY) -20000 + (ID) 6300
Total energy: -160952.0 ( -89.62 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_3GP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP5-query.scw
PDB file :
Tito_Scwrl_3GP5.pdb
: