Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNNGRMLGVIGGSGFYTFFGSDTRTVN-SDTPYGQPSAPITIGTIGVHDVAFLPRHGAHHQYSAHAVPYRANMWALRALGVRRVFGPCAVGSLDPELEPGAVVVPDQLVDRTSGRADTYFD------FGGVHAAFADPYCPTLRAAVTGLPGVV-----DGGTMVVIQGPRFSTRAESQWFAAAGCNLVNMTGYPEAVLARELELCYAAIALVTDVDAGVAAGDGVKAADVFAAFGENIELLKRLVRAAIDRVADERTCTHCQHHAGVPLPFELP
3OZD Chain:A ((12-258))
-------IGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQI----------------------
General information:
TITO was launched using:
RESULT:
Template:
3OZD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154678 for 1952 contacts (-79.2/contact) +
2D Compatibility (PS) -25598 + (NN) -12192 + (LL) 1300
1D Compatibility (HY) -17200 + (ID) 4600
Total energy: -212968.0 ( -109.10 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3OZD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OZD-query.scw
PDB file :
Tito_Scwrl_3OZD.pdb
: