Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD
4NB5 Chain:C ((14-160))
-------------PDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQR-----
General information:
TITO was launched using:
RESULT:
Template:
4NB5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80138 for 994 contacts (-80.6/contact) +
2D Compatibility (PS) -16382 + (NN) -12646 + (LL) 396
1D Compatibility (HY) -19200 + (ID) 7350
Total energy: -135320.0 ( -136.14 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_4NB5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NB5-query.scw
PDB file :
Tito_Scwrl_4NB5.pdb
: