Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYRVEADRDLCQGHAMCELEAPEYFRVPKRG----QVEILDPEPPEEARGVIKHAVWACPTQALSIRETGE
1SIZ Chain:C ((1-65))
-AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIE---DEELYNCAKEAMEACPVSAITIEE---
General information:
TITO was launched using:
RESULT:
Template:
1SIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32706 for 399 contacts (-82.0/contact) +
2D Compatibility (PS) -6324 + (NN) -1950 + (LL) 16
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -46864.0 ( -117.45 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1SIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIZ-query.scw
PDB file :
Tito_Scwrl_1SIZ.pdb
: