Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFA-AARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2OHO Chain:A ((14-262))
------PIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVES-----SIAKKIVYDSLAPLV-GKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQKAVEHRFFTTANPEIFQEIASIWL----------------
General information:
TITO was launched using:
RESULT:
Template:
2OHO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -231947 for 2112 contacts (-109.8/contact) +
2D Compatibility (PS) -26999 + (NN) -15182 + (LL) 552
1D Compatibility (HY) -24800 + (ID) 4550
Total energy: -302926.0 ( -143.43 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_2OHO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OHO-query.scw
PDB file :
Tito_Scwrl_2OHO.pdb
: