Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKPTSAGQADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTTNRRMALYALEAPTTAA
1YK3 Chain:D ((10-209))
---------ADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTTNRRMALYALEAPTTA-
General information:
TITO was launched using:
RESULT:
Template:
1YK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103717 for 1526 contacts (-68.0/contact) +
2D Compatibility (PS) -20916 + (NN) -5977 + (LL) 444
1D Compatibility (HY) -26400 + (ID) 10000
Total energy: -166566.0 ( -109.15 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1YK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YK3-query.scw
PDB file :
Tito_Scwrl_1YK3.pdb
: