Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRHTRFHPIKLAWITAVVAGLMVGVATPADAEPGQWDPTLPALVSAGAPGDPLAVANASLQATAQATQTTLDLGRQFLGGLGINLGGPAASAPSAATTGASRIPRANARQAVEYVIRRAGSQMGVPYSWGGGSLQGPSKGVDSGANTVGFDCSGLVRYAFAGVGVLIPRFSGDQYNAGRHVPPAEAKRGDLIFYGPGGGQHVTLYLGNGQMLEASGSAGKVTVSPVRKAGMTPFVTRIIEY
3GT2 Chain:A ((11-140))
----------------------------------------------------------------------------------------------------------DYQQATDVVIARGLSQRGVPFSWAGGGINGPTRGTGTGANTVGFDASGLMQYAYAGAGIKLPRSSGAMYRVGQKILPQQARKGDLIFYGPEGTQSVAMYLGNNQMLEVGDV---VQVSPVRTAGMAPYMVRVL--
General information:
TITO was launched using:
RESULT:
Template:
3GT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83230 for 1042 contacts (-79.9/contact) +
2D Compatibility (PS) -14485 + (NN) -12314 + (LL) 6104
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -118675.0 ( -113.89 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_3GT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GT2-query.scw
PDB file :
Tito_Scwrl_3GT2.pdb
: