Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEFDDIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRRYRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQ-TTSE--IWRGVT-SE--GAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDA----ASFVGEIGKILADSVEQLQAAAFVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRF-QASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWK--QFLIGDRVGSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA |
| 4PT2 Chain:P ((20-278)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNETVI-QVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDIVGE-QETAMVFTDA-RKFKTIPIIYKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANGRLTVP-LGDWTSPGGGFQAIVEATRKLNEQGHFGPYAVVLSPRLYSQLHRIYEKTGVLEIET----IRQLASDGVYQSNRLRG---------ESGVVVSTGRENMDLAVSMDMVAAYLGA-------SRMNHPFRVLEALLLRIKHPDAICTL------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4PT2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -74806 for 1760 contacts (-42.5/contact) +
2D Compatibility (PS) -25587 + (NN) -2221 + (LL) 14476
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -94138.0 ( -53.49 by residue)
QMean score : 0.203
|
|
|