Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRSGHPVTLDDLPLRADLRGKAPYGAPQLAVP--VRLNTNEN---PHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVPSYSMHPIISDGTHTEWIEASRANDFGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPG--IAIVDEAYGEF---SSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSLNDMGFRVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVGIPGYLRATTGLAEENDAFLRASARIATDLVPVTRSPVGAP |
| 4R5Z Chain:A ((6-353)) | --------------LRPELAG-LPVYVPGKTVPGAIKLASNETVFGPLPSVRAAIDRATDTV-------NRYPDNGCVQLKAALARHL----GPDFAPEHVAVGCGSVSLCQQLVQVTASVGDEVVFGWRSFELYPPQVRVAGAIPIQVP-LTDHTFDLYAMLATVTDRT-RLIFVCNPNNPTSTVVGPDALARFVEAVPAHILIAIDEAYVEYIRDGMRPDSLGLVRAH-NNVVVLRTFSKAYGLAGLRIGYAIGHPDVITALDKVYVPFTVSSIGQAAAIASLDAADELLARTDTVVAERARVSAELRAAGFTLPPSQANFVWLPLGSRTQDFVEQAADARIVVRPYGTDG-VRVTVAAPEENDAFLRFARRWRSD------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R5Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173956 for 2864 contacts (-60.7/contact) +
2D Compatibility (PS) -37310 + (NN) -23980 + (LL) 1936
1D Compatibility (HY) -19600 + (ID) 6050
Total energy: -258960.0 ( -90.42 by residue)
QMean score : 0.531
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