Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
4WD0 Chain:A ((12-244))
---LELLPAVDIVDGQAVRLL------ETSYGTPLEAALNWQNDGAEWVHMVDLDAAFG--NNAALISDVVSQLNVKVELSGGLRDDESLERALELGVARVNLGTAALENPEWTRKAIDRFGDKIAVGLDVR----GTTLAGRGWTKEGGDLWEVLARLEDAGCARYVVTDVTKD----GPNVELLRQMVEKTGKPVVASGGISSLEDLRVLRELVPLGVEGAIVGKALYAGAFTLPEAL-----
General information:
TITO was launched using:
RESULT:
Template:
4WD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166812 for 1839 contacts (-90.7/contact) +
2D Compatibility (PS) -24113 + (NN) -9811 + (LL) 708
1D Compatibility (HY) -27200 + (ID) 7000
Total energy: -234228.0 ( -127.37 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_4WD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WD0-query.scw
PDB file :
Tito_Scwrl_4WD0.pdb
: