Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSIAQEHDCLLIDLDGTVFCGRQPTGGAVQ---SLSQVRSRKLFVTNNASRSADEVAAHLCELGFTATGEDVVTSAQ-SAAHLLAGQLAPGARVLIVGTEALANEVAAVGLRPVRRFEDRPDAVVQGLSMTTGWSDLAEAALAIRAGALWVAANVDPTLPTERGLLPGNGSMVAALRTATGMDPR-VAGKPAPA---LMTEAVARGDFRAALVVGDRLDTDIEGANAAGLPSLMVLTGVNSAWDAVYAEPVRRPTYIGHDLRSLHQDSKLLAVAPQPGWQIDVGGGAVTVCANGDVDDLEFIDDGLSIVRAVASAVWEARAADLHQRPLRIEAGDERARAALQRWSLMRSDHPVTSVGTQ |
| 1VJR Chain:A ((18-266)) | --------ELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDDAVVTSGEITAEHML--KRFGRCRIFLLGTPQLKKVFEAYGHVID---EENPDFVVLGFDKTLTYERLKKACILLRKGKFYIATHPDINCPSKEGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMA-MVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAE--TKPDFVFKNLGEL------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VJR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111506 for 2004 contacts (-55.6/contact) +
2D Compatibility (PS) -27020 + (NN) -14865 + (LL) 7760
1D Compatibility (HY) -18400 + (ID) 3950
Total energy: -167981.0 ( -83.82 by residue)
QMean score : 0.567
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