Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGV--DGS-VCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
3PUT Chain:A ((4-154))
-RSAEHTTFVIERRLTAPVARVFRAWSTPESKRQWFAC-H---V--PLEYALDFRPGGTERNYTADTDGLLHAYDARYIDIVPDTRIIYAYEMKLGQ----TRISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYG---DNGAR--LQGTEIGLDNLELFLVRET--
General information:
TITO was launched using:
RESULT:
Template:
3PUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47788 for 980 contacts (-48.8/contact) +
2D Compatibility (PS) -15379 + (NN) -4135 + (LL) 1016
1D Compatibility (HY) -2800 + (ID) 1300
Total energy: -70386.0 ( -71.82 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_3PUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PUT-query.scw
PDB file :
Tito_Scwrl_3PUT.pdb
: