Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASRTMVSSGSEFESAVG-YSRAVRIGPLVVVAG----TTGSGD---DIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIR----PVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG
3VCZ Chain:A ((36-148))
---------------AAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEV-ARLPKDVGIEIEA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52031 for 659 contacts (-79.0/contact) +
2D Compatibility (PS) -11183 + (NN) -2630 + (LL) 672
1D Compatibility (HY) -9200 + (ID) 1750
Total energy: -76122.0 ( -115.51 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3VCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VCZ-query.scw
PDB file :
Tito_Scwrl_3VCZ.pdb
: