Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAGR--GAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVLHRQR
3IA8 Chain:A ((6-134))
------PVVEPLSWMLGTWLSDPPGAGTYPTLQPFQYLEEVHISHVGQPMLNFSFNSFHPDTRKPMHRECGFIRL-KPDTNKVAFVSAQNTGVVEVEEGEVNGQ--ELCIASHSIARISFA-KEPHVEQITRKFRLNSE---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3IA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43130 for 808 contacts (-53.4/contact) +
2D Compatibility (PS) -13236 + (NN) -5632 + (LL) 3440
1D Compatibility (HY) -10400 + (ID) 2100
Total energy: -71058.0 ( -87.94 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_3IA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IA8-query.scw
PDB file :
Tito_Scwrl_3IA8.pdb
: