Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
2MKV Chain:A ((23-41))
----------------------------------TVRNGGLIFAGLAFIVGLL--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2MKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4743 for 68 contacts (-69.8/contact) +
2D Compatibility (PS) -1683 + (NN) 1645 + (LL) 6912
1D Compatibility (HY) -1600 + (ID) 200
Total energy: 331.0 ( 4.87 by residue)
QMean score : -0.252
(partial model without unconserved sides chains):
PDB file :
Tito_2MKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2MKV-query.scw
PDB file :
Tito_Scwrl_2MKV.pdb
: