Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRRV
4X62 Chain:K ((11-126))
----------------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR-
General information:
TITO was launched using:
RESULT:
Template:
4X62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17358 for 859 contacts (-20.2/contact) +
2D Compatibility (PS) -12911 + (NN) -9791 + (LL) 1024
1D Compatibility (HY) -8400 + (ID) 3500
Total energy: -50936.0 ( -59.30 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_4X62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X62-query.scw
PDB file :
Tito_Scwrl_4X62.pdb
: