Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNTNPVAAWKALKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRT-AGHVI--DSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGG--YVRDVVERVAPSVLLGRRDGLSRVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDHIGNIGEEV
2A8C Chain:A ((29-189))
-------------------------------------LADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHGH--LLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDGFLV------------
General information:
TITO was launched using:
RESULT:
Template:
2A8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128567 for 1160 contacts (-110.8/contact) +
2D Compatibility (PS) -16503 + (NN) -3427 + (LL) 2328
1D Compatibility (HY) -11200 + (ID) 2750
Total energy: -160119.0 ( -138.03 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2A8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A8C-query.scw
PDB file :
Tito_Scwrl_2A8C.pdb
: