Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSEDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVDVAPAASGAPHAAGGRL
1KRQ Chain:A ((9-138))
-------------LLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIV--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KRQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56279 for 934 contacts (-60.3/contact) +
2D Compatibility (PS) -14507 + (NN) -10399 + (LL) 3196
1D Compatibility (HY) -8400 + (ID) 1750
Total energy: -88139.0 ( -94.37 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1KRQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KRQ-query.scw
PDB file :
Tito_Scwrl_1KRQ.pdb
: