Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLFGKRKSRATRRAEARAIKARAKLEAKLSAKNEARRIKAAQRAESKALKAQLKARRDSDRAALKVAEAELKVAREGKLLSPTRIRRLLTVSRLLAPILTPVIYRAAMAARGLIDQRRADQLGVPLAQIGRFSGHGARLSARVGGAERSLRMVQEKKPKDVETKQFVSAVTNRLTDLSAAVAAAEHMPA---------KRRRTAHSAISSQLDGIEADLMARLGLT |
4J2C Chain:A ((52-107)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------NNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMS------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J2C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6222 for 217 contacts (-28.7/contact) +
2D Compatibility (PS) -5059 + (NN) -1827 + (LL) 14704
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -304.0 ( -1.40 by residue)
QMean score : 0.504
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