Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
4DW6 Chain:A ((44-234))
-----------------------DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAEN---TDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
4DW6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102640 for 1375 contacts (-74.6/contact) +
2D Compatibility (PS) -20601 + (NN) -16647 + (LL) 772
1D Compatibility (HY) -24800 + (ID) 9400
Total energy: -173316.0 ( -126.05 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_4DW6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DW6-query.scw
PDB file :
Tito_Scwrl_4DW6.pdb
: