Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQTTPAVRTFQDLILALQNYWAEQGCVVLQPYDME---------VGAGTFHTATFLRAIGPETW-NAAYVQPSRRP----TD----GRYGENPNRLQHYYQFQVVLKPNPE-----NFQELYLGSLKA-IGIDPLV------------------------HDIRF---VEDNWESPTLGAWGLGWEIWL----------NGMEVTQFTYFQ--QV--GG-IECYPVTGEITYGLERLAMYLQGVDSVYDL-VWTDGPFGKVTYGDVFHQNEVEQSTFNFEHANVPKLFELFDFYESEANRLIALELPLPTYEMVLKASHTFNLLDARRAISVTERQRYILRVRTLARAVAQSYLQARARLGFPMATPELRDEVLAKLKEAE |
| 1YFS Chain:A ((2-247)) | -------SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTS------RHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1YFS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -87378 for 1275 contacts (-68.5/contact) +
2D Compatibility (PS) -19052 + (NN) -5667 + (LL) 488
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -118309.0 ( -92.79 by residue)
QMean score : 0.338
|
|
|