Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVDGFVQPVGEGLADQLVGHQVGYGGVQWDQCLAEVGDVAVVHFFHQAVRQVGFVEQGVEAVVAGEQRRRGEEELLGDLQHRLDPFLDAGFAGHAVGGVEQVRYLFDVGVDEAGEYVFRVLALRLDGAMQVGQAAGYQISQVTVAGFAEVRLLDEFTEGSGVHGVSHTTGMVKKRRNIAGGARRLRRDCHNRFVVMRG |
| 2WW9 Chain:B ((42-64)) | ----------------------------------------------------------------------------------------------------------------------------------PDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WW9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2081 for 89 contacts (-23.4/contact) +
2D Compatibility (PS) -2363 + (NN) 1265 + (LL) 10284
1D Compatibility (HY) -400 + (ID) 200
Total energy: 6505.0 ( 73.09 by residue)
QMean score : -0.591
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