Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASHEHYYVPAQSKWPIIASIGLLVTVFGLGTWF--NDLTAGHKESHGPWIFFVGGLIIAYMLFGWFGNVIRESR-AGLYSAQMDRSFRWGMSWFIFSEVMFFAAFFGALFYVRHFAGPWLGGEGAKGVAHMLWPNFQYSWPLLQTPDPKLFPPPSAVIEPWKLPLINTILLVTSSFTVTFAHHALKKNKRGPLKAWLALTVLLGIAFLILQAEEYVHAYNELGLTLGAGIYGSTFFMLTGFHGAHVTLGALILGIMLIRILRGHFDAEHHFGFEAASWYWHFVDVVWIGLFIFVYVI
2ZXW Chain:C ((8-257))
------YHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMT----------LLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGG----------------CWP----------PTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYY----EAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWW
General information:
TITO was launched using:
RESULT:
Template:
2ZXW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -227418 for 1770 contacts (-128.5/contact) +
2D Compatibility (PS) -25540 + (NN) -11394 + (LL) 2312
1D Compatibility (HY) -28800 + (ID) 5200
Total energy: -296040.0 ( -167.25 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_2ZXW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZXW-query.scw
PDB file :
Tito_Scwrl_2ZXW.pdb
: