Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKVAIVLLLLATLVSLFSGLFFLVKDQGHGSRVVNSLTVRVVLAAATLVLVAWGFYSGELNSHAPWHF
2LNY Chain:A ((1-20))
--------------MAAVAGLYGLGEDRQHRKKQ-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4849 for 66 contacts (-73.5/contact) +
2D Compatibility (PS) -2158 + (NN) -318 + (LL) 5344
1D Compatibility (HY) -400 + (ID) 250
Total energy: -2631.0 ( -39.86 by residue)
QMean score : 0.031
(partial model without unconserved sides chains):
PDB file :
Tito_2LNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LNY-query.scw
PDB file :
Tito_Scwrl_2LNY.pdb
: