Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLAIPMPERPRRARGRLQLLAIIGLVVGPMLLASAMYKWNFWVPQGRSYSGALIGNGQTPADLGVQGR--------SQGEQWQLLVTAPGTCGEDCQQLVYLARQINIALGREASRAGHALAAS-GEL--PADFANL-VRQDYPRLQ---RYGLDP-ALYDK----------------AGGGERPLLWVVDPHGNLVLRYDAKA--NGKKLLKDVQLLLKLSHIG |
1XZO Chain:A ((10-173)) | ---------------------------------------------------------NYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQ-LKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTLK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XZO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45699 for 847 contacts (-54.0/contact) +
2D Compatibility (PS) -13957 + (NN) -7252 + (LL) 4480
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -65228.0 ( -77.01 by residue)
QMean score : 0.414
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