Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQRKAVLVMGAGDATGGAIARRFAREGYVACVARRNAE-KLEPLVQAIRDQGGEALACGCDARQEQQVIDLFARIEGEVGALEAVIFNVGANVWFPITETTERVYRKVWEMAAFGGFLTGREAARVMLPRQ-RGTIIFTGATASLRGRAHFAAFSGAKFALRALAQSMARELGPKDIHVAHPIIDGAIDTDFIRETLPELYKRKEQDGIL------DPEHIAETYWQIHCQPRDCWVHELDLRPWMETF
1GCO Chain:A ((8-225))
----KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNN-IGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTQ
General information:
TITO was launched using:
RESULT:
Template:
1GCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126255 for 1719 contacts (-73.4/contact) +
2D Compatibility (PS) -22733 + (NN) -9530 + (LL) 340
1D Compatibility (HY) -10000 + (ID) 3000
Total energy: -171178.0 ( -99.58 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1GCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GCO-query.scw
PDB file :
Tito_Scwrl_1GCO.pdb
: