Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR
4NAH Chain:A ((9-160))
------PGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK-
General information:
TITO was launched using:
RESULT:
Template:
4NAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99222 for 1103 contacts (-90.0/contact) +
2D Compatibility (PS) -17041 + (NN) -11075 + (LL) 788
1D Compatibility (HY) -16400 + (ID) 3750
Total energy: -146700.0 ( -133.00 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4NAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAH-query.scw
PDB file :
Tito_Scwrl_4NAH.pdb
: