Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQQHDTHSKAIGYLLWIFGFTGSHRFYYGKPITGTIWFFTFGLFFIGWIIDLFLIPSMDREADRRFQ--GGNLDYNVAWILLTFLGVLGVHRMYMGKWITGIIYLFTGGLFFLGVLYDFWTLNGQVSERNGPQRI
3J2N Chain:U ((54-104))
----------------------------FGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYP
General information:
TITO was launched using:
RESULT:
Template:
3J2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14107 for 178 contacts (-79.3/contact) +
2D Compatibility (PS) -4912 + (NN) -335 + (LL) 1892
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -20062.0 ( -112.71 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_3J2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J2N-query.scw
PDB file :
Tito_Scwrl_3J2N.pdb
: